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publications [2019/03/18 09:13]
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publications [2019/07/22 18:52] (current)
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 ==Research articles== ==Research articles==
 +
 ====2019==== ====2019====
 +    - Haiguang Liu*, Weontae Lee*: The XFEL Protein Crystallography:​ Developments and Perspectives. Int. J. Mol. Sci. 2019, 20(14), 3421; https://​doi.org/​10.3390/​ijms20143421
 +    - Xuanxuan Li, Chufeng Li, Haiguang Liu*. ClickX: a visualization-based program for preprocessing of serial crystallography data. Journal of Applied Crystallography. 52, 674-682 (2019) http://​scripts.iucr.org/​cgi-bin/​paper?​S1600576719005363
 +    - Huang Lanqing, Jingeng Mai, Qihui Zhu, Zhen Guo, Siying Qin, Peilin Yang, Xuanxuan Li, Yingchen Shi, Xiaotian Wang, Qining Wang, Na Li, Can Xie* & Haiguang Liu*. Reversible rearrangement of magnetic nanoparticles in solution studied using time resolved SAXS method. Journal of Synchrotron Radiation, (2019). 26, 1294-1301 https://​journals.iucr.org/​s/​issues/​2019/​04/​00/​co5123/​index.html
 +    - Langenfeld, Florent and Axenopoulos,​ Apostolos and Benhabiles, Halim and Daras, Petros and Giachetti, Andrea and Han, Xusi and Hammoudi, Karim and Kihara, Daisuke and Lai, Tuan M. and Liu, Haiguang and Melkemi, Mahmoud and Mylonas, Stelios K. and Terashi, Genki and Wang, Yufan and Windal, Feryal and Montes, Matthieu, Protein Shape Retrieval Contest, Eurographics Workshop on 3D Object Retrieval, https://​doi.org/​10.2312/​3dor.20191058 (2019)
 +    - Jae-Hyun Park, Ji-Hye Yun, Yingchen Shi, Jeongmin Han, Xuanxuan Li, Zeyu Jin, Taehee Kim, Jaehyun Park, Sehan Park, Haiguang Liu* and Weontae Lee*, Non-Cryogenic Structure and Dynamics of HIV-1 Integrase Catalytic Core Domain by X-ray Free-Electron Lasers, ​ **Int. J. Mol. Sci.** 2019, 20(8), 1943; https://​doi.org/​10.3390/​ijms20081943
 +    - Yang Wang, Jae-Hyun Park, Cecylia Severin Lupala, Ji-Hye Yun, Zeyu Jin, Lanqing Huang, Xuanxuan Li, Leihan Tang, Weontae Lee & Haiguang Liu Computer aided protein engineering to enhance the thermo-stability of CXCR1- T4 lysozyme complex, **Scientific Reports** volume 9, Article number: 5317 (2019)https://​www.nature.com/​articles/​s41598-019-41838-2
     - Yingchen Shi, Ke Yin, Xuecheng Tai, Hasan DeMirci, Ahmad Hosseinizadeh,​ Brenda G Hogue, Haoyuan Li, Abbas Ourmazd, Peter Schwander, Ivan A Vartanyants,​ Chun Hong Yoon, Andrew Aquila*, Haiguang Liu*,Evaluation of the performance of classification algorithms for XFEL single-particle imaging data. **IUCrJ**, 6(2), 331-340 (2019). http://​journals.iucr.org/​m/​issues/​2019/​02/​00/​cw5020/​index.html     - Yingchen Shi, Ke Yin, Xuecheng Tai, Hasan DeMirci, Ahmad Hosseinizadeh,​ Brenda G Hogue, Haoyuan Li, Abbas Ourmazd, Peter Schwander, Ivan A Vartanyants,​ Chun Hong Yoon, Andrew Aquila*, Haiguang Liu*,Evaluation of the performance of classification algorithms for XFEL single-particle imaging data. **IUCrJ**, 6(2), 331-340 (2019). http://​journals.iucr.org/​m/​issues/​2019/​02/​00/​cw5020/​index.html
-    - Ji-Hye Yun#, Xuanxuan Li#, Jae-Hyun Park, Yang Wang, Mio Ohki, Zeyu Jin, Wonbin Lee, Sam-Yong Park, Hao Hu, Chufeng Li, Nadia Zatsepin, Mark S. Hunter, Raymond G. Sierra, Jake Koralek, Chun Hong Yoon, Hyun-Soo Cho, Uwe Weierstall, Leihan Tang, Haiguang Liu* and Weontae Lee*,   ​Non-cryogenic structure of a chloride pump provides crucial clues to temperature-dependent channel transport efficiency, http://​www.jbc.org/​content/​294/​3/​794  +    - Ji-Hye Yun#, Xuanxuan Li#, Jae-Hyun Park, Yang Wang, Mio Ohki, Zeyu Jin, Wonbin Lee, Sam-Yong Park, Hao Hu, Chufeng Li, Nadia Zatsepin, Mark S. Hunter, Raymond G. Sierra, Jake Koralek, Chun Hong Yoon, Hyun-Soo Cho, Uwe Weierstall, Leihan Tang, Haiguang Liu* and Weontae Lee*,   ​Non-cryogenic structure of a chloride pump provides crucial clues to temperature-dependent channel transport efficiency, ​**Journal of Biological Chemistry** 294, 794-804 (2019) ​http://​www.jbc.org/​content/​294/​3/​794  
-    - Chufeng Li, Xuanxuan Li, Richard Kirian, John C. H. Spence, Haiguang Liu and Nadia A. Zatsepin*, SPIND: a reference-based auto-indexing algorithm for sparse serial crystallography data, **IUCrJ**, http://​journals.iucr.org/​m/​issues/​2019/​01/​00/​cw5018/​index.html ​+    - Chufeng Li, Xuanxuan Li, Richard Kirian, John C. H. Spence, Haiguang Liu and Nadia A. Zatsepin*, SPIND: a reference-based auto-indexing algorithm for sparse serial crystallography data, **IUCrJ**, ​6(1), 72-84 (2019) ​http://​journals.iucr.org/​m/​issues/​2019/​01/​00/​cw5018/​index.html ​
  
 ====2018==== ====2018====
 +    - Wang, Yang, Cecylia S. Lupala, Haiguang Liu*, and Xubo Lin*. Current topics in medicinal chemistry 18, no. 27 : 2268-2277 (2018) https://​doi.org/​10.2174/​1568026619666181212102856
     - Mengchen Pu, Zhijie Xu, Yao Peng, Yaguang Hou, Dongsheng Liu, Yang Wang, Haiguang Liu*, Gaojie Song*, Zhi-Jie Liu*, Protein Cell, 9(7): 659-663 (2018) https://​link.springer.com/​article/​10.1007/​s13238-017-0482-7 ​     - Mengchen Pu, Zhijie Xu, Yao Peng, Yaguang Hou, Dongsheng Liu, Yang Wang, Haiguang Liu*, Gaojie Song*, Zhi-Jie Liu*, Protein Cell, 9(7): 659-663 (2018) https://​link.springer.com/​article/​10.1007/​s13238-017-0482-7 ​
     - Wang T., H. Liu, Y. Duan. Assessment of the transmembrane domain structures in GPCR Dock 2013 models. J. of Structural Biology, 201 (3), 210-220 (2018) https://​www.sciencedirect.com/​science/​article/​pii/​S1047847717301971 ​     - Wang T., H. Liu, Y. Duan. Assessment of the transmembrane domain structures in GPCR Dock 2013 models. J. of Structural Biology, 201 (3), 210-220 (2018) https://​www.sciencedirect.com/​science/​article/​pii/​S1047847717301971 ​
     - Shi Y. H. Liu. The principle of X-ray free electron lasers and their applications in biological molecular structure determination,​ Wuli 《物理》,​ 47, 426-436 (2018) http://​www.wuli.ac.cn/​CN/​10.7693/​wl20180703 ​     - Shi Y. H. Liu. The principle of X-ray free electron lasers and their applications in biological molecular structure determination,​ Wuli 《物理》,​ 47, 426-436 (2018) http://​www.wuli.ac.cn/​CN/​10.7693/​wl20180703 ​
-  ​- Xilun Xiang, Haiguang Liu*, IDPM: an online database for ion distribution in protein molecules, BMC Bioinformatics,​ **19**:102 (2018) https://​bmcbioinformatics.biomedcentral.com/​articles/​10.1186/​s12859-018-2110-9+   - Xilun Xiang, Haiguang Liu*, IDPM: an online database for ion distribution in protein molecules, BMC Bioinformatics,​ **19**:102 (2018) https://​bmcbioinformatics.biomedcentral.com/​articles/​10.1186/​s12859-018-2110-9
   - Yang Wang(王洋),​ Cecylia Severin Lupala, Ting Wang(王亭),​ Xuanxuan Li(李选选),​ Ji-Hye Yun, Jae-hyun Park, Zeyu Jin(金泽宇),​ Weontae Lee, Leihan Tan(汤雷翰),​ Haiguang Liu(刘海广),​ **Chinese Physics B**, **27**(3), 038702 (2018) http://​cpb.iphy.ac.cn/​EN/​abstract/​abstract71722.shtml   - Yang Wang(王洋),​ Cecylia Severin Lupala, Ting Wang(王亭),​ Xuanxuan Li(李选选),​ Ji-Hye Yun, Jae-hyun Park, Zeyu Jin(金泽宇),​ Weontae Lee, Leihan Tan(汤雷翰),​ Haiguang Liu(刘海广),​ **Chinese Physics B**, **27**(3), 038702 (2018) http://​cpb.iphy.ac.cn/​EN/​abstract/​abstract71722.shtml
  

Richard Feynman

“everything that is living can be understood in terms of the jiggling and wiggling of atoms”.

and now, we want to watch atoms jiggling and wiggling.

X-rays, electrons, fluorescence light, the advances of photon sciences, together with computational modeling, are making this happen.