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publications [2019/07/22 18:52]
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publications [2020/04/03 08:16] (current)
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 ==Research articles== ==Research articles==
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 +====2020====
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 +    - Siyuan Liu, Xilun Xiang, Xiang Gao & Haiguang Liu*, Neighborhood Preference of Amino Acids in Protein Structures and its Applications in Protein Structure Assessment, **Scientific Reports** volume 10, Article number: 4371 (2020) https://​www.nature.com/​articles/​s41598-020-61205-w
 +    - Xuanxuan Li, Chufeng Li and Haiguang Liu, SPIND-TC: an indexing method for two-color X-ray diffraction data, **Acta Crystallography A: Foundations & Advances **, http://​journals.iucr.org/​a/​issues/​2020/​03/​00/​ib5084/​index.html
 +    - Hao He; Can Liu; Haiguang Liu* Model Reconstruction from Small-Angle X-Ray Scattering Data Using Deep Learning Methods.** iScience** 23(3) 100906 (2020). https://​doi.org/​10.1016/​j.isci.2020.100906
 +    - Nass, K., Redecke, L., Perbandt, M. et al. In cellulo crystallization of Trypanosoma brucei IMP dehydrogenase enables the identification of genuine co-factors. **Nat Commun** 11, 620 (2020). https://​doi.org/​10.1038/​s41467-020-14484-w
  
 ====2019==== ====2019====
-    - Haiguang Liu*, Weontae Lee*: The XFEL Protein Crystallography:​ Developments and Perspectives. Int. J. Mol. Sci. 2019, 20(14), 3421; https://​doi.org/​10.3390/​ijms20143421 +    ​- Y. Xu, Y. Wang, Y. Wang, K. Liu, Y. Peng, D. Yao, H. Tao, H. Liu and G. Song. Mutagenesis facilitated crystallization of GLP-1R.** IUCrJ** 6, 996-1006 (2019) https://​journals.iucr.org/​m/​issues/​2019/​06/​00/​tj5027/​index.html  
-    - Xuanxuan Li, Chufeng Li, Haiguang Liu*. ClickX: a visualization-based program for preprocessing of serial crystallography data. Journal of Applied Crystallography. 52, 674-682 (2019) http://​scripts.iucr.org/​cgi-bin/​paper?​S1600576719005363 +    ​- Haiguang Liu*, Weontae Lee*: The XFEL Protein Crystallography:​ Developments and Perspectives. ​**Int. J. Mol. Sci.** 2019, 20(14), 3421; https://​doi.org/​10.3390/​ijms20143421 
-    - Huang Lanqing, Jingeng Mai, Qihui Zhu, Zhen Guo, Siying Qin, Peilin Yang, Xuanxuan Li, Yingchen Shi, Xiaotian Wang, Qining Wang, Na Li, Can Xie* & Haiguang Liu*. Reversible rearrangement of magnetic nanoparticles in solution studied using time resolved SAXS method. Journal of Synchrotron Radiation, (2019). 26, 1294-1301 https://​journals.iucr.org/​s/​issues/​2019/​04/​00/​co5123/​index.html +    - Xuanxuan Li, Chufeng Li, Haiguang Liu*. ClickX: a visualization-based program for preprocessing of serial crystallography data. **Journal of Applied Crystallography.** 52, 674-682 (2019) http://​scripts.iucr.org/​cgi-bin/​paper?​S1600576719005363 
-    - Langenfeld, Florent and Axenopoulos,​ Apostolos and Benhabiles, Halim and Daras, Petros and Giachetti, Andrea and Han, Xusi and Hammoudi, Karim and Kihara, Daisuke and Lai, Tuan M. and Liu, Haiguang and Melkemi, Mahmoud and Mylonas, Stelios K. and Terashi, Genki and Wang, Yufan and Windal, Feryal and Montes, Matthieu, Protein Shape Retrieval Contest, Eurographics Workshop on 3D Object Retrieval, https://​doi.org/​10.2312/​3dor.20191058 (2019)+    - Huang Lanqing, Jingeng Mai, Qihui Zhu, Zhen Guo, Siying Qin, Peilin Yang, Xuanxuan Li, Yingchen Shi, Xiaotian Wang, Qining Wang, Na Li, Can Xie* & Haiguang Liu*. Reversible rearrangement of magnetic nanoparticles in solution studied using time resolved SAXS method. ​**Journal of Synchrotron Radiation**, (2019). 26, 1294-1301 https://​journals.iucr.org/​s/​issues/​2019/​04/​00/​co5123/​index.html 
 +    - Langenfeld, Florent and Axenopoulos,​ Apostolos and Benhabiles, Halim and Daras, Petros and Giachetti, Andrea and Han, Xusi and Hammoudi, Karim and Kihara, Daisuke and Lai, Tuan M. and Liu, Haiguang and Melkemi, Mahmoud and Mylonas, Stelios K. and Terashi, Genki and Wang, Yufan and Windal, Feryal and Montes, Matthieu, ​**Protein Shape Retrieval Contest**, Eurographics Workshop on 3D Object Retrieval, https://​doi.org/​10.2312/​3dor.20191058 (2019)
     - Jae-Hyun Park, Ji-Hye Yun, Yingchen Shi, Jeongmin Han, Xuanxuan Li, Zeyu Jin, Taehee Kim, Jaehyun Park, Sehan Park, Haiguang Liu* and Weontae Lee*, Non-Cryogenic Structure and Dynamics of HIV-1 Integrase Catalytic Core Domain by X-ray Free-Electron Lasers, ​ **Int. J. Mol. Sci.** 2019, 20(8), 1943; https://​doi.org/​10.3390/​ijms20081943     - Jae-Hyun Park, Ji-Hye Yun, Yingchen Shi, Jeongmin Han, Xuanxuan Li, Zeyu Jin, Taehee Kim, Jaehyun Park, Sehan Park, Haiguang Liu* and Weontae Lee*, Non-Cryogenic Structure and Dynamics of HIV-1 Integrase Catalytic Core Domain by X-ray Free-Electron Lasers, ​ **Int. J. Mol. Sci.** 2019, 20(8), 1943; https://​doi.org/​10.3390/​ijms20081943
     - Yang Wang, Jae-Hyun Park, Cecylia Severin Lupala, Ji-Hye Yun, Zeyu Jin, Lanqing Huang, Xuanxuan Li, Leihan Tang, Weontae Lee & Haiguang Liu Computer aided protein engineering to enhance the thermo-stability of CXCR1- T4 lysozyme complex, **Scientific Reports** volume 9, Article number: 5317 (2019)https://​www.nature.com/​articles/​s41598-019-41838-2     - Yang Wang, Jae-Hyun Park, Cecylia Severin Lupala, Ji-Hye Yun, Zeyu Jin, Lanqing Huang, Xuanxuan Li, Leihan Tang, Weontae Lee & Haiguang Liu Computer aided protein engineering to enhance the thermo-stability of CXCR1- T4 lysozyme complex, **Scientific Reports** volume 9, Article number: 5317 (2019)https://​www.nature.com/​articles/​s41598-019-41838-2

Richard Feynman

“everything that is living can be understood in terms of the jiggling and wiggling of atoms”.

and now, we want to watch atoms jiggling and wiggling.

X-rays, electrons, fluorescence light, the advances of photon sciences, together with computational modeling, are making this happen.