The webserver to reconstruct 3D protein models from 1D SAXS profile using machine learning methods DecodeSAXS
The basic functions for the modules implemented in the SASTBX are provided here, including:
Details can be found here: http://liulab.csrc.ac.cn/sastbx
to access the service from intra-CSRC network, click this link SASTBX-SERVER-at-CSRC
Disulfide Bond Engineering Site prediction
Protein Structure Assessment using Neighbhorhood Preference of amino acid packing
Ion distribution in protein molecules
The ion distributions around amino acids in protein molecules are summarized in this server. The distribution in radial direction, angular space, and 3D space can be visualized.
http://liulab.csrc.ac.cn/idpm or directly from: http://liulab.csrc.ac.cn/~xiangxilun/index.html
The paper is published on BMC Bioinformatics: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2110-9
“everything that is living can be understood in terms of the jiggling and wiggling of atoms”.
and now, we want to watch atoms jiggling and wiggling.
X-rays, electrons, fluorescence light, the advances of photon sciences, together with computational modeling, are making this happen.